SNP Profiles of EET-272 (offtype, similar to offtype PA-150, parcel 1209)   View Data

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 Key

 1234567891011121314
_Input profile
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
1._RUQ_6
CCACAACCAAAGGGCCAAGGGGAAAACC
2._MITC-000381
CCACAACCAAAGGGCCAAGGGGAAAACC
3._RUQ_6
______GG_______
4._GC-03-032-3-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
5._GC-03-032-3-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
6._EET_272_[ECU]
_____CCAG_AA_____
7._EET_272_[ECU]
_____CCAG_AA_____
8._GC-03-032-3-11
CCAC_CCTTCTGGGGAACCGGTTTTGG
9._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
10._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
11._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
12._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
13._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
14._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
15._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
16._EET_272_[ECU]
_____CTGG_AA_____
17._EET_272_[ECU]
_____CTGG_AA_____
18._EET_272_[ECU]
_____CTGG_AA_____
19._EET_272_[ECU]
_____CTGG_AA_____
20._EET_272_[ECU]
_____CTGG_AA_____
21._EET_272_[ECU]
_____CTGG_AA_____
22._EET_272_[ECU]
_____CTGG_AA_____
23._EET_272_[ECU]
_____CTGG_AA_____
24._RUQ_6
_____CT_GG__GG___
25._EET_272_[ECU]
_____CT__AA_____
 1516171819202122232425262728
_Input profile
AAAAAGAAACGGAAGGCCGGCCGGCCGG
1._RUQ_6
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._MITC-000381
AAAAAAAAAAGGAAGGACAAGGAACCAG
3._RUQ_6
_TT______AC_CC___
4._GC-03-032-3-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
5._GC-03-032-3-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
6._EET_272_[ECU]
_TTCT_AC_TT_CCCCGGGGGGCC
7._EET_272_[ECU]
_TTCT_AC_TT_CCCCGGGGGGCC
8._GC-03-032-3-11
TTTTTT_AAGGTTCCACTTCCAAGGCT
9._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
10._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
11._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
12._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
13._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
14._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
15._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
16._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
17._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
18._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
19._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
20._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
21._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
22._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
23._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
24._RUQ_6
_TT_TT___CCACTTCCAAGGCT
25._EET_272_[ECU]
_TT__AA_TT_ACTT_AA_CT
 2930313233343536373839404142
_Input profile
AGTTGGACGGAGGGGGGGCCTTATGGGG
1._RUQ_6
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._MITC-000381
GGATGGAAGGAAGGAGGGCCTTTTAGGG
3._RUQ_6
_____AA______AG_
4._GC-03-032-3-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
5._GC-03-032-3-11
CTAAGG_CCAGGGCCGGGGAAATGGGG
6._EET_272_[ECU]
CT__AACCAG_CCGG__AT__
7._EET_272_[ECU]
CT___CCAG_CCGG__AT__
8._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
9._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
10._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
11._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
12._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
13._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
14._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
15._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
16._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
17._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
18._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
19._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
20._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
21._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
22._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
23._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
24._RUQ_6
__GGAACCAA_CT____AGGG
25._EET_272_[ECU]
CT__AACCAA_CTGG_____
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGGGCCACAAACAGCG
1._RUQ_6
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._MITC-000381
AAAGGGGGGGAAGGAAAACCGGACGGGG
3._RUQ_6
_________AC___GG
4._GC-03-032-3-11
AATTGGGGGGTTCC_CCACAAGTAGCG
5._GC-03-032-3-11
AATTGGGGGGTTCC_CCACAAGTAGCG
6._EET_272_[ECU]
AA___GG____AC_GT_CG
7._EET_272_[ECU]
AA___GG____AC_GT_CG
8._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
9._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
10._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
11._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
12._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
13._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
14._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
15._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
16._EET_272_[ECU]
AA___GG____CC_GT_GG
17._EET_272_[ECU]
AA___GG____CC_GT_GG
18._EET_272_[ECU]
AA___GG____CC_GT_GG
19._EET_272_[ECU]
AA___GG____CC_GT_GG
20._EET_272_[ECU]
AA___GG____CC_GT_GG
21._EET_272_[ECU]
AA___GG____CC_GT_GG
22._EET_272_[ECU]
AA___GG____CC_GT_GG
23._EET_272_[ECU]
AA___GG____CC_GT_GG
24._RUQ_6
AA_____CC__CC_GT_GG
25._EET_272_[ECU]
____AG______GT__
 5758596061626364656667686970
_Input profile
CCGGAGAAAGAACCAGAAAACCAAAACG
1._RUQ_6
AAGGGGAGAAAACCGGAAAACCAAACCC
2._MITC-000381
AAGGGGAGAAAACCGGAAAACCAAACCC
3._RUQ_6
__CC___GGGG____ACTT
4._GC-03-032-3-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
5._GC-03-032-3-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
6._EET_272_[ECU]
CC__TT__GG_______
7._EET_272_[ECU]
CC__TT__GG_______
8._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
9._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
10._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
11._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
12._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
13._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
14._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
15._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
16._EET_272_[ECU]
AA__CT__GG_______
17._EET_272_[ECU]
AA__CT__GG_______
18._EET_272_[ECU]
AA__CT__GG_______
19._EET_272_[ECU]
AA__CT__GG_______
20._EET_272_[ECU]
AA__CT__GG_______
21._EET_272_[ECU]
AA__CT__GG_______
22._EET_272_[ECU]
AA__CT__GG_______
23._EET_272_[ECU]
AA__CT__GG_______
24._RUQ_6
AA_CCCT__GGGGTT__TTAC_
25._EET_272_[ECU]
AA__CT__GG_______
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
1._RUQ_6
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._MITC-000381
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
3._RUQ_6
_CC__GG______AGX_XX_X
4._GC-03-032-3-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
5._GC-03-032-3-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
6._EET_272_[ECU]
_GGCC___CTCC_AACTAGX_XX_X
7._EET_272_[ECU]
_GGCC___CTCC_AACTAGX_XX_X
8._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
9._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
10._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
11._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
12._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
13._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
14._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
15._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
16._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
17._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
18._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
19._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
20._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
21._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
22._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
23._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
24._RUQ_6
_CCTT_-CC_____AGX_XX_X
25._EET_272_[ECU]
__CT___CTGG_AACTAGX_XX_X

Input profile: EET_272_[ECU] GC-03-32-3-11

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._EET_272_[ECU] RUQ_6

70.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_272_[ECU] MITC-000381

70.7 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

3._EET_272_[ECU] RUQ_6

53.1 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._EET_272_[ECU] GC-03-032-3-11

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._EET_272_[ECU]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

7._EET_272_[ECU]

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._EET_272_[ECU] GC-03-032-3-11

35.3 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

17._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

19._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

20._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

21._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

22._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

23._EET_272_[ECU]

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

24._EET_272_[ECU] RUQ_6

33.3 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._EET_272_[ECU]

25 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998